Yes the pipe coming out the very top vertically.
There will be a Tee piece connected to the top of the cylinder. The pipe going up in to the loft is the safety vent; the one going off at right angles is the hot feed to the taps. These pipes will be hot.
The 3 port valve is a week old as it was changed when the old one had apparently permanently stuck. At first it seemed to be working, with the pipework into and out of the cylinder turning cold when the hot water was turned off at the programmer, however now the pipework stays hot even when it's turned off.
So changing the valve did not really solve the problem.
🙁
That led me to check the 3 port valve, taking off the motor, and it turns but only turns about a quarter turn as you say, clunking when turned left or right each time. There doesn't seem to be a middle position when I turn it.
There isn't a physically locatable position. The valve is held half way between the two end positions by the crafty circuit within the actuator.
From what you say, the valve is not sticking so, as the valve is new and unlikely to be faulty, it comes down to a wiring problem.
I checked the position when CH only was on and it was at 45 degrees, I then put it on hot water only and it turned to 90 degrees. I put both on and it went to the 45 degree position again, so I guess it should have been at some other position if both were on?
How were you able to check this with the actuator in position?
Do you have a multimeter? If so, here are some checks you can do.
Turn main supply to system off
Turn room and cylinder stat right down
Set HW and CH OFF at timer
Check valve lever has resistance when moved from Auto to Man.
Remove lid of wiring centre/junction box and locate grey, white and orange wires from the valve.
Turn power ON, turn HW ON at timer.
Turn HW stat to max
Boiler should light and pipe from valve to cylinder get hot. The pipe to rads should not get hot.
Use meter to check voltage on grey wire is 0V and on white wire is 0v
Turn CH ON at timer and turn HW stat up.
Boiler should run and both pipes from the valve get hot
Use meter to check that grey wire has 0v and white wire has 230V
Turn cylinder stat right down
Boiler should run and pipe to rads get hot. Pipe to cylinder should not get hot.
Use meter to check that grey wire has 230v and white wire has 230v
Turn HW OFF at timer
Boiler should run and pipe to rads get hot. Pipe to cylinder should not get hot.
Use meter to check that grey wire has 230v and white wire has 230v.
Please post results of tests, even if you do not have a meter.