only thing if can be is the syphon isnt sealing properly and allowing water to pass into the pan or else the water level too high in the cistern and its overflowing into the pan!
This is it. One or the other. Either don't flush toilet overnight and see if water level has reached internal overflow level or turn off water to toilet and see if cistern slowly empties itself. First one = inlet valve second one = Flush valve/flush valve seal. Could be both but sounds unlikely with brand new stuff. Not uncommon to see both valves gones after 3-5 years on over-engineered garb.